Proceedings

Recent Advances in Predictive Modeling with Electronic Health Records

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Proceedings of the Thirty-Third International Joint Conference on Artificial Intelligence. Survey Track. Pages 8272-8280.

https://doi.org/10.24963/ijcai.2024/914

Abstract

The development of electronic health records (EHR) systems has enabled the collection of a vast amount of digitized patient data. However, utilizing EHR data for predictive modeling presents several challenges due to its unique characteristics. With the advancements in machine learning techniques, deep learning has demonstrated its superiority in various applications, including healthcare. This survey systematically reviews recent advances in deep learning-based predictive models using EHR data. Specifically, we introduce the background of EHR data and provide a mathematical definition of the predictive modeling task. We then categorize and summarize predictive deep models from multiple perspectives. Furthermore, we present benchmarks and toolkits relevant to predictive modeling in healthcare. Finally, we conclude this survey by discussing open challenges and suggesting promising directions for future research.

  1. [Armanious et al., 2020] Karim Armanious, Chenming Jiang, Marc Fischer, Thomas Küstner, Tobias Hepp, Kon- stantin Nikolaou, Sergios Gatidis, and Bin Yang. Medgan: Medical image translation using gans. Computerized medical imaging and graphics, 79:101684, 2020.
  2. [Bai et al., 2018] Tian Bai, Shanshan Zhang, Brian L Egle- ston, and Slobodan Vucetic. Interpretable representation learning for healthcare via capturing disease progression through time. In KDD, pages 43-51, 2018.
  3. [Baytas et al., 2017] Inci M Baytas, Cao Xiao, Xi Zhang, Fei Wang, Anil K Jain, and Jiayu Zhou. Patient subtyping via time-aware lstm networks. In KDD, pages 65-74, 2017.
  4. [Biswal et al., 2021] Siddharth Biswal, Soumya Ghosh, Jon Duke, Bradley Malin, Walter Stewart, Cao Xiao, and Ji- meng Sun. Eva: Generating longitudinal electronic health records using conditional variational autoencoders. In MLHC, pages 260-282, 2021.
  5. [Chen and Cai, 2015] Long-Sheng Chen and Sheng-Jhe Cai. Neural-network-based resampling method for detecting diabetes mellitus. JMBE, 35:824-832, 2015.
  6. [Choi et al., 2016a] Edward Choi, Mohammad Taha Ba- hadori, Andy Schuetz, Walter F Stewart, and Jimeng Sun. Doctor ai: Predicting clinical events via recurrent neural networks. In MLHC, pages 301-318, 2016.
  7. [Choi et al., 2016b] Edward Choi, Mohammad Taha Ba- hadori, Jimeng Sun, Joshua Kulas, Andy Schuetz, and Walter Stewart. Retain: An interpretable predictive model for healthcare using reverse time attention mechanism. In NeurIPS, pages 3504-3512, 2016.
  8. [Choi et al., 2017] Edward Choi, Mohammad Taha Ba- hadori, Le Song, Walter F Stewart, and Jimeng Sun. Gram: graph-based attention model for healthcare representation learning. In KDD, pages 787-795, 2017.
  9. [Cui et al., 2022] Suhan Cui, Jiaqi Wang, Xinning Gui, Ting Wang, and Fenglong Ma. Automed: Automated medical risk predictive modeling on electronic health records. In BIBM, pages 948-953, 2022.
  10. [Cui et al., 2024] Suhan Cui, Jiaqi Wang, Yuan Zhong, Han Liu, Ting Wang, and Fenglong Ma. Automated fusion of multimodal electronic health records for better medical predictions. In SDM, pages 361-369, 2024.
  11. [Das et al., 2023] Trisha Das, Zifeng Wang, and Jimeng Sun. Twin: Personalized clinical trial digital twin generation. In KDD, pages 402-413, 2023.
  12. [Feng et al., 2019] Yujuan Feng, Zhenxing Xu, Lin Gan, Ning Chen, Bin Yu, Ting Chen, and Fei Wang. Dcmn: Double core memory network for patient outcome pre- diction with multimodal data. In ICDM, pages 200-209, 2019.
  13. [Gao et al., 2020] Junyi Gao, Cao Xiao, Yasha Wang, Wen Tang, Lucas M Glass, and Jimeng Sun. Stagenet: Stage- aware neural networks for health risk prediction. In WWW, pages 530-540, 2020.
  14. [Huang and Ma, 2021] Guanjie Huang and Fenglong Ma. Concad: Contrastive learning-based cross attention for sleep apnea detection. In ECML-PKDD, pages 68-84, 2021.
  15. [Huang and Ma, 2022] Guanjie Huang and Fenglong Ma. Trustsleepnet: A trustable deep multimodal network for sleep stage classification. In BHI, pages 01-04, 2022.
  16. [Huang et al., 2022] Guanjie Huang, Ye Yuan, Guohong Cao, and Fenglong Ma. Accsleepnet: An axis-aware hy- brid deep fusion model for sleep stage classification us- ing wrist-worn accelerometer data. In BIBM, pages 1005- 1012, 2022.
  17. [Kosolwattana et al., 2023] Tanapol Kosolwattana, Chenang Liu, Renjie Hu, Shizhong Han, Hua Chen, and Ying Lin. A self-inspected adaptive smote algorithm (sasmote) for highly imbalanced data classification in healthcare. Bio- Data Mining, 16(1):15, 2023.
  18. [Kwon et al., 2018] Bum Chul Kwon, Min-Je Choi, Joanne Taery Kim, Edward Choi, Young Bin Kim, Soonwook Kwon, Jimeng Sun, and Jaegul Choo. Retain- vis: Visual analytics with interpretable and interactive recurrent neural networks on electronic medical records. IEEE TVCG, 25(1):299-309, 2018.
  19. [Li et al., 2020] Yikuan Li, Shishir Rao, José Roberto Ayala Solares, Abdelaali Hassaine, Rema Ramakrishnan, Dex- ter Canoy, Yajie Zhu, Kazem Rahimi, and Gholamreza Salimi-Khorshidi. Behrt: transformer for electronic health records. Scientific reports, 10(1):7155, 2020.
  20. [Li et al., 2022] Yikuan Li, Mohammad Mamouei, Gholam- reza Salimi-Khorshidi, Shishir Rao, Abdelaali Hassaine, Dexter Canoy, Thomas Lukasiewicz, and Kazem Rahimi. Hi-behrt: Hierarchical transformer-based model for accu- rate prediction of clinical events using multimodal longi- tudinal electronic health records. IEEE JBHI, 27(2):1106- 1117, 2022.
  21. [Luo et al., 2020] Junyu Luo, Muchao Ye, Cao Xiao, and Fenglong Ma. Hitanet: Hierarchical time-aware attention networks for risk prediction on electronic health records. In KDD, pages 647-656, 2020.
  22. [Lyu et al., 2023] Kewei Lyu, Yu Tian, Yong Shang, Tianshu Zhou, Ziyue Yang, Qianghua Liu, Xi Yao, Ping Zhang, Jianghua Chen, and Jingsong Li. Causal knowledge graph construction and evaluation for clinical decision support of diabetic nephropathy. JBI, 139:104298, 2023.
  23. [Ma et al., 2017] Fenglong Ma, Radha Chitta, Jing Zhou, Quanzeng You, Tong Sun, and Jing Gao. Dipole: Diag- nosis prediction in healthcare via attention-based bidirec- tional recurrent neural networks. In KDD, pages 1903- 1911, 2017.
  24. [Ma et al., 2018a] Fenglong Ma, Jing Gao, Qiuling Suo, Quanzeng You, Jing Zhou, and Aidong Zhang. Risk pre- diction on electronic health records with prior medical knowledge. In KDD, pages 1910-1919. ACM, 2018.
  25. [Ma et al., 2018b] Fenglong Ma, Quanzeng You, Houping Xiao, Radha Chitta, Jing Zhou, and Jing Gao. Kame: Knowledge-based attention model for diagnosis prediction in healthcare. In CIKM, pages 743-752, 2018.
  26. [Ma et al., 2018c] Tengfei Ma, Cao Xiao, and Fei Wang. Health-atm: A deep architecture for multifaceted patient health record representation and risk prediction. In SDM, pages 261-269, 2018.
  27. [Ma et al., 2020a] Fenglong Ma, Yaqing Wang, Jing Gao, Houping Xiao, and Jing Zhou. Rare disease prediction by generating quality-assured electronic health records. In SDM, pages 514-522, 2020.
  28. [Ma et al., 2020b] Liantao Ma, Chaohe Zhang, Yasha Wang, Wenjie Ruan, Jiantao Wang, Wen Tang, Xinyu Ma, Xin Gao, and Junyi Gao. Concare: Personalized clinical fea- ture embedding via capturing the healthcare context. In AAAI, volume 34, pages 833-840, 2020.
  29. [Rasmy et al., 2021] Laila Rasmy, Yang Xiang, Ziqian Xie, Cui Tao, and Degui Zhi. Med-bert: pretrained con- textualized embeddings on large-scale structured elec- tronic health records for disease prediction. NPJ digital medicine, 4(1):86, 2021.
  30. [Sachin et al., 2023] DN Sachin, B Annappa, Sateesh Am- basange, and Alan E Tony. A multimodal contrastive fed- erated learning for digital healthcare. SN Computer Sci- ence, 4(5):674, 2023.
  31. [Tan et al., 2022] Yanchao Tan, Carl Yang, Xiangyu Wei, Chaochao Chen, Weiming Liu, Longfei Li, Jun Zhou, and Xiaolin Zheng. Metacare++: Meta-learning with hier- archical subtyping for cold-start diagnosis prediction in healthcare data. In SIGIR, pages 449-459, 2022.
  32. [Tang et al., 2020] Shengpu Tang, Parmida Davarmanesh, Yanmeng Song, Danai Koutra, Michael W Sjoding, and Jenna Wiens. Democratizing ehr analyses with fiddle: a flexible data-driven preprocessing pipeline for structured clinical data. JAMIA, 27(12):1921-1934, 2020.
  33. [Vaswani et al., 2017] Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit, Llion Jones, Aidan N Gomez, Łukasz Kaiser, and Illia Polosukhin. Attention is all you need. In Advances in neural information processing sys- tems, pages 5998-6008, 2017.
  34. [Wang and Sun, 2022] Zifeng Wang and Jimeng Sun. Promptehr: Conditional electronic healthcare records generation with prompt learning. In EMNLP, 2022.
  35. [Wang et al., 2022] Jiaqi Wang, Cheng Qian, Suhan Cui, Lu- cas Glass, and Fenglong Ma. Towards federated covid- 19 vaccine side effect prediction. In ECML-PKDD, pages 437-452. Springer, 2022.
  36. [Wang et al., 2023] Xiaochen Wang, Junyu Luo, Jiaqi Wang, Ziyi Yin, Suhan Cui, Yuan Zhong, Yaqing Wang, and Fen- glong Ma. Hierarchical pretraining on multimodal elec- tronic health records. In EMNLP, pages 2839-2852, 2023.
  37. [Xu et al., 2018] Yanbo Xu, Siddharth Biswal, Shriprasad R Deshpande, Kevin O Maher, and Jimeng Sun. Raim: Re- current attentive and intensive model of multimodal pa- tient monitoring data. In KDD, pages 2565-2573, 2018.
  38. [Xu et al., 2021] Zhen Xu, David R So, and Andrew M Dai. Mufasa: Multimodal fusion architecture search for elec- tronic health records. In AAAI, volume 35, pages 10532- 10540, 2021.
  39. [Xu et al., 2022] Yuyang Xu, Haochao Ying, Siyi Qian, Fuzhen Zhuang, Xiao Zhang, Deqing Wang, Jian Wu, and Hui Xiong. Time-aware context-gated graph attention net- work for clinical risk prediction. IEEE TKDE, 2022.
  40. [Yang and Wu, 2021] Bo Yang and Lijun Wu. How to lever- age multimodal ehr data for better medical predictions? In EMNLP, pages 4029-4038, 2021.
  41. [Yang et al., 2023a] Kai Yang, Yongxin Xu, Peinie Zou, Hongxin Ding, Junfeng Zhao, Yasha Wang, and Bing Xie. Kerprint: local-global knowledge graph enhanced diagno- sis prediction for retrospective and prospective interpreta- tions. In AAAI, volume 37, pages 5357-5365, 2023.
  42. [Yang et al., 2023b] Zhichao Yang, Avijit Mitra, Weisong Liu, Dan Berlowitz, and Hong Yu. Transformehr: transformer-based encoder-decoder generative model to enhance prediction of disease outcomes using electronic health records. Nature Communications, 2023.
  43. [Yao et al., 2023] Zijun Yao, Bin Liu, Fei Wang, Daby Sow, and Ying Li. Ontology-aware prescription recommenda- tion in treatment pathways using multi-evidence health- care data. ACM TIS, 41(4):1-29, 2023.
  44. [Ye et al., 2020] Muchao Ye, Junyu Luo, Cao Xiao, and Fen- glong Ma. Lsan: Modeling long-term dependencies and short-term correlations with hierarchical attention for risk prediction. In CIKM, pages 1753-1762, 2020.
  45. [Ye et al., 2021a] Muchao Ye, Suhan Cui, Yaqing Wang, Junyu Luo, Cao Xiao, and Fenglong Ma. Medpath: Augmenting health risk prediction via medical knowledge paths. In WWW, pages 1397-1409, 2021.
  46. [Ye et al., 2021b] Muchao Ye, Suhan Cui, Yaqing Wang, Junyu Luo, Cao Xiao, and Fenglong Ma. Medretriever: Target-driven interpretable health risk prediction via re- trieving unstructured medical text. In CIKM, pages 2414- 2423, 2021.
  47. [Zhang et al., 2019] Jue Zhang, Li Chen, Fazeel Abid, et al. Prediction of breast cancer from imbalance respect using cluster-based undersampling method. Journal of health- care engineering, 2019, 2019.
  48. [Zhang et al., 2021] Ziqi Zhang, Chao Yan, Thomas A Lasko, Jimeng Sun, and Bradley A Malin. Synteg: a framework for temporal structured electronic health data simulation. JAMIA, 28(3):596-604, 2021.
  49. [Zhong et al., 2024] Yuan Zhong, Suhan Cui, Jiaqi Wang, Xiaochen Wang, Ziyi Yin, Yaqing Wang, Houping Xiao, Mengdi Huai, Ting Wang, and Fenglong Ma. Meddiffu- sion: Boosting health risk prediction via diffusion-based data augmentation. In SDM, pages 499-507, 2024.

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